MolNFT v1 · #89892 · protein
Crystal structures of rada intein from pyrococcus horikoshii
4E2T · Pho rada intein: “Crystal structures of rada intein from pyrococcus horikoshii”. X-ray diffraction, 2 pockets (best druggability 0.39). MolNFT v1 #89892 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4E2T
- Type
- protein
- Length
- 341 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Pho rada intein
- UniProt
- O58001
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 2 distinct chains · 11% helix, 58% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Pho rada intein | protein | 172 | 12% helix, 60% strand | O58001 |
| B | Pho rada intein | protein | 169 | 11% helix, 56% strand | O58001 |
Ligands and binding sites
- GOL · Glycerol · additive · 4 copies · chains A, B
- EPE · 4-(2-hydroxyethyl)-1-piperazine ethanesulfonic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 82 | 0.39 | 0.78 | 17 | empty |
| 2 | 128 | 0.39 | 0.74 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 678 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4E2T · Crystal Structures of RadA intein from Pyrococcus horikoshii · the same entry in another collection · chain A against A, TM-score 1.00
- O58001 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O58001) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O58001
- Elsewhere: RCSB PDB 4E2T · PDBe 4E2T · UniProt O58001
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