MolNFT v1 · #89890 · DNA
Interactions of BA2+ with a non-self-complementary Z-type DNA duplex
4E2R · DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'): “Interactions of BA2+ with a non-self-complementary Z-type DNA duplex”. X-ray diffraction, 1 ligand (BA). MolNFT v1 #89890 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4E2R
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*CP*AP*CP*GP*CP*G)-3'); DNA (5'-D(*CP*GP*CP*GP*TP*G)-3')
- Ligands
- BA
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*CP*AP*CP*GP*CP*G)-3') | dna | 6 | — | — |
| B | DNA (5'-D(*CP*GP*CP*GP*TP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- BA · Barium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 324 Ų buried · 23 hydrogen bonds · nucleic-nucleic
Compared structures
- 4E2R · Interactions of Ba2+ with a non-self-complementary Z-type DNA duplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4E2R · PDBe 4E2R
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.