MolNFT v1 · #89742 · protein

Leishmania major peroxidase is a cytochrome C peroxidase

4DY9: “Leishmania major peroxidase is a cytochrome C peroxidase”. X-ray diffraction, 1 ligand (HEM), 1 pocket (best druggability 0.76). MolNFT v1 #89742 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4DY9
Type: protein
Length: 108 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C
UniProt: Q4QEN5
Ligands: HEM
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C	protein	108	38% helix, 2% strand	Q4QEN5

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	220	0.76	0.90	32	HEM

Compared structures

4DY9 · Leishmania major Peroxidase is a Cytochrome c Peroxidase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q4QEN5
Elsewhere: RCSB PDB 4DY9 · PDBe 4DY9 · UniProt Q4QEN5

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