MolNFT v1 · #89507 · protein + RNA
Crystal structure of the thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position, and streptomycin bound
4DR7: “Crystal structure of the thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically…”. X-ray diffraction. MolNFT v1 #89507 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4DR7
- Type
- protein + RNA
- Length
- 3,921 residues
- Chains
- 25
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P80371, P80372, P80373, Q5SHQ5, Q5SLP8, P17291, Q5SHQ2, P80374, Q5SHN7, P80376, F6DEQ7, P80377, Q5SHQ1, Q5SJ76, Q5SJH3, Q5SHP7, Q5SLQ0, Q5SHP2, P80380, Q5SIH3
Structure
x-ray diffraction · 25 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | rna | 1513 | — | — |
| B | — | protein | 235 | — | P80371 |
| C | — | protein | 206 | — | P80372 |
| D | — | protein | 208 | — | P80373 |
| E | — | protein | 150 | — | Q5SHQ5 |
| F | — | protein | 101 | — | Q5SLP8 |
| G | — | protein | 155 | — | P17291 |
| H | — | protein | 138 | — | Q5SHQ2 |
| I | — | protein | 127 | — | P80374 |
| J | — | protein | 98 | — | Q5SHN7 |
| K | — | protein | 117 | — | P80376 |
| L | — | protein | 124 | — | F6DEQ7 |
| M | — | protein | 118 | — | P80377 |
| N | — | protein | 60 | — | Q5SHQ1 |
| O | — | protein | 88 | — | Q5SJ76 |
| P | — | protein | 83 | — | Q5SJH3 |
| Q | — | protein | 100 | — | Q5SHP7 |
| R | — | protein | 71 | — | Q5SLQ0 |
| S | — | protein | 80 | — | Q5SHP2 |
| T | — | protein | 99 | — | P80380 |
| U | — | protein | 24 | — | Q5SIH3 |
| V | — | rna | 4 | — | — |
| W | — | rna | 11 | — | — |
| a | — | rna | 8 | — | — |
| b | — | rna | 3 | — | — |
Compared structures
- 4DR7 · Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P80371
- Every structure of UniProt P80372
- Every structure of UniProt P80373
- Every structure of UniProt Q5SHQ5
- Every structure of UniProt Q5SLP8
- Every structure of UniProt P17291
- Every structure of UniProt Q5SHQ2
- Every structure of UniProt P80374
- Every structure of UniProt Q5SHN7
- Every structure of UniProt P80376
- Every structure of UniProt F6DEQ7
- Every structure of UniProt P80377
- Every structure of UniProt Q5SHQ1
- Every structure of UniProt Q5SJ76
- Every structure of UniProt Q5SJH3
- Every structure of UniProt Q5SHP7
- Every structure of UniProt Q5SLQ0
- Every structure of UniProt Q5SHP2
- Every structure of UniProt P80380
- Every structure of UniProt Q5SIH3
- Elsewhere: RCSB PDB 4DR7 · PDBe 4DR7 · UniProt P80371 · UniProt P80372 · UniProt P80373 · UniProt Q5SHQ5 · UniProt Q5SLP8 · UniProt P17291 · UniProt Q5SHQ2 · UniProt P80374 · UniProt Q5SHN7 · UniProt P80376 · UniProt F6DEQ7 · UniProt P80377 · UniProt Q5SHQ1 · UniProt Q5SJ76 · UniProt Q5SJH3 · UniProt Q5SHP7 · UniProt Q5SLQ0 · UniProt Q5SHP2 · UniProt P80380 · UniProt Q5SIH3
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