MolNFT v1 · #89354 · protein
Crystal structure of the gt domain of clostridium difficile toxin a
4DMV: “Crystal structure of the gt domain of clostridium difficile toxin a”. X-ray diffraction, 2 pockets (best druggability 0.74). MolNFT v1 #89354 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4DMV
- Type
- protein
- Length
- 537 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Toxin a
- EC
- 2.4.1.-
- UniProt
- P16154
- Pockets
- 2 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Toxin a (EC 2.4.1.-) | protein | 537 | 58% helix, 8% strand | P16154 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1142 | 0.74 | 0.77 | 102 | empty |
| 2 | 177 | 0.50 | 0.77 | 27 | empty |
Compared structures
- 4DMV · Crystal structure of the GT domain of Clostridium difficile Toxin A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16154
- Elsewhere: RCSB PDB 4DMV · PDBe 4DMV · UniProt P16154
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