MolNFT v1 · #88991 · protein
Crystal structure of aminoglycoside phosphotransferase APH(2")- ID/APH(2")-iva
4DBX · APH(2")-id: “Crystal structure of aminoglycoside phosphotransferase APH(2")- ID/APH(2")-iva”. X-ray diffraction, 2 pockets (best druggability 0.75). MolNFT v1 #88991 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4DBX
- Type
- protein
- Length
- 295 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- APH(2")-id
- UniProt
- O68183
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | APH(2")-id | protein | 295 | 48% helix, 15% strand | O68183 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1053 | 0.75 | 0.78 | 77 | empty |
| 2 | 66 | 0.26 | 0.72 | 16 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 4DBX · Crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O68183
- Elsewhere: RCSB PDB 4DBX · PDBe 4DBX · UniProt O68183
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