MolNFT v1 · #88886 · protein
Crystal structure of the 2-pyrone-4,6-dicarboxylic acid hydrolase from sphingomonas paucimobilis
4D8L · 2-pyrone-4,6-dicarbaxylate hydrolase: “Crystal structure of the 2-pyrone-4,6-dicarboxylic acid hydrolase from sphingomonas paucimobilis”. X-ray diffraction, 1 pocket (best druggability 0.67). MolNFT v1 #88886 on GenesisL1: 3D…
- PDB
- 4D8L
- Type
- protein
- Length
- 294 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2-pyrone-4,6-dicarbaxylate hydrolase
- EC
- 3.1.1.57
- UniProt
- O87170
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2-pyrone-4,6-dicarbaxylate hydrolase (EC 3.1.1.57) | protein | 294 | 43% helix, 14% strand | O87170 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 503 | 0.67 | 0.78 | 48 | empty |
Compared structures
- 4D8L · Crystal structure of the 2-pyrone-4,6-dicarboxylic acid hydrolase from sphingomonas… · the same entry in another collection · chain A against A, TM-score 1.00
- O87170 · AlphaFold monomer V2.0 prediction for 2-pyrone-4,6-dicarboxylate hydrolase (O87170) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O87170
- Elsewhere: RCSB PDB 4D8L · PDBe 4D8L · UniProt O87170
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