MolNFT v1 · #88879 · protein
High resolution structures of monomeric S. pyogenes speb reveals role of glycine-rich active site loop
4D8E · Streptopain: “High resolution structures of monomeric S. pyogenes speb reveals role of glycine-rich active site loop”. X-ray diffraction, 2 ligands (E64, NO3). MolNFT v1 #88879 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 4D8E
- Type
- protein
- Length
- 254 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Streptopain
- EC
- 3.4.22.10
- UniProt
- E0PTS8
- Ligands
- E64, NO3
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Streptopain (EC 3.4.22.10) | protein | 254 | 25% helix, 22% strand | E0PTS8 |
Ligands and binding sites
- E64 · N-[N-[1-hydroxycarboxyethyl-carbonyl]leucylamino-butyl]-guanidine · ligand · chains A
- NO3 · Nitrate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 4D8E · High resolution structures of monomeric S. pyogenes SpeB reveals role of glycine-rich… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0PTS8
- Elsewhere: RCSB PDB 4D8E · PDBe 4D8E · UniProt E0PTS8
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