MolNFT v1 · #88837 · protein
High-resolution structure of the extracellular olfactomedin domain from gliomedin
4D77: “High-resolution structure of the extracellular olfactomedin domain from gliomedin”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #88837 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4D77
- Type
- protein
- Length
- 245 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gliomedin
- UniProt
- Q80WL1
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 56% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gliomedin | protein | 245 | 4% helix, 56% strand | Q80WL1 |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4D77 · High-resolution structure of the extracellular olfactomedin domain from gliomedin · the same entry in another collection · chain A against A, TM-score 1.00
- Q80WL1 · AlphaFold monomer V2.0 prediction for gliomedin (Q80WL1) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q80WL1
- Elsewhere: RCSB PDB 4D77 · PDBe 4D77 · UniProt Q80WL1
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