MolNFT v1 · #88833 · protein

X-ray structure of a peroxiredoxin

4D73 · 1-cys peroxiredoxin: “X-ray structure of a peroxiredoxin”. X-ray diffraction, 3 pockets (best druggability 0.59). MolNFT v1 #88833 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4D73
Type: protein
Length: 342 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 1-cys peroxiredoxin
EC: 1.11.1.15
UniProt: Q5MYR6
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 2 distinct chains · 31% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	1-cys peroxiredoxin (EC 1.11.1.15)	protein	172	33% helix, 27% strand	Q5MYR6
B	1-cys peroxiredoxin (EC 1.11.1.15)	protein	170	29% helix, 27% strand	Q5MYR6

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.59	0.83	23	empty
2	150	0.47	0.77	23	empty
3	83	0.44	0.80	18	empty

Interfaces

1 interface between chains.

A–B · 898 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

4D73 · X-ray structure of a peroxiredoxin · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5MYR6
Elsewhere: RCSB PDB 4D73 · PDBe 4D73 · UniProt Q5MYR6

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