MolNFT v1 · #88673 · protein

Structure of a di peptide bound pot family peptide transporter

4D2C · Di-or TRIPEPTIDE:H+ symporter: “Structure of a di peptide bound pot family peptide transporter”. X-ray diffraction, 3 ligands (78M, 78N, PO4), 2 pockets (best druggability 0.67). MolNFT v1 #88673 on GenesisL1: 3D structure, binding…

PDB: 4D2C
Type: protein
Length: 431 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Di-or TRIPEPTIDE:H+ symporter
UniProt: Q5M4H8
Ligands: 78M, 78N, PO4
Pockets: 2 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 82% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Di-or TRIPEPTIDE:H+ symporter	protein	431	82% helix, 1% strand	Q5M4H8

Ligands and binding sites

78M · (2S)-2,3-dihydroxypropyl(7z)-pentadec-7-enoate · ligand · 4 copies · chains A
78N · (2R)-2,3-dihydroxypropyl(7z)-pentadec-7-enoate · ligand · 2 copies · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	426	0.67	0.79	44	empty
2	406	0.61	0.75	38	empty

Compared structures

4D2C · Structure of a di peptide bound POT family peptide transporter · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5M4H8
Elsewhere: RCSB PDB 4D2C · PDBe 4D2C · UniProt Q5M4H8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.