MolNFT v1 · #88665 · protein

A H224Y mutant for vim-7 from pseudomonas aeruginosa

4D1W · Metallo-B-lactamase: “A H224Y mutant for vim-7 from pseudomonas aeruginosa”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.43). MolNFT v1 #88665 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4D1W
Type: protein
Length: 227 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Metallo-B-lactamase
UniProt: Q840P9
Ligands: ZN
Pockets: 1 · best druggability 0.43

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Metallo-B-lactamase	protein	227	24% helix, 30% strand	Q840P9

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	174	0.43	0.74	31	empty

Modifications

Observed in the structure: 1 modified (oxidation).

Compared structures

4D1W · A H224Y mutant for VIM-7 from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q840P9
Elsewhere: RCSB PDB 4D1W · PDBe 4D1W · UniProt Q840P9

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