MolNFT v1 · #88664 · protein
A F218Y mutant of vim-7 from pseudomonas aeruginosa
4D1V · Metallo-B-lactamase: “A F218Y mutant of vim-7 from pseudomonas aeruginosa”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.44). MolNFT v1 #88664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4D1V
- Type
- protein
- Length
- 227 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallo-B-lactamase
- UniProt
- Q840P9
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.44
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallo-B-lactamase | protein | 227 | 24% helix, 30% strand | Q840P9 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 116 | 0.44 | 0.78 | 21 | ZN |
Compared structures
- 4D1V · A F218Y mutant of VIM-7 from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q840P9
- Elsewhere: RCSB PDB 4D1V · PDBe 4D1V · UniProt Q840P9
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