MolNFT v1 · #8854 · protein
Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3 a resolution
1HD8: “Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at 2.3 a resolution”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1 #8854 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 1HD8
- Type
- protein
- Length
- 337 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Penicillin-binding protein 5
- EC
- 3.4.16.4
- UniProt
- P04287
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 30% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Penicillin-binding protein 5 (EC 3.4.16.4) | protein | 337 | 30% helix, 34% strand | P04287 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 95 | 0.38 | 0.76 | 24 | empty |
| 2 | 110 | 0.38 | 0.74 | 22 | empty |
Compared structures
- 1HD8 · Crystal structure of a deacylation-defective mutant of penicillin-binding protein 5 at… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P04287
- Elsewhere: RCSB PDB 1HD8 · PDBe 1HD8 · UniProt P04287
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.