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MolNFT v1 · #88466 · protein

Structure of apobacterioferritin

4CVP: “Structure of apobacterioferritin”. X-ray diffraction, 1 ligand (FE), 1 pocket (best druggability 0.49). MolNFT v1 #88466 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4CVP
Type
protein
Length
155 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Bacterioferritin
EC
1.16.3.1
UniProt
P0ABD4
Ligands
FE
Pockets
1 · best druggability 0.49

Structure

x-ray diffraction · 1 distinct chain · 81% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ABacterioferritin (EC 1.16.3.1)protein15581% helix, 0% strandP0ABD4

Ligands and binding sites

  • FE · Fe (III) ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
1740.490.8425empty

Compared structures

  • 4CVP · Structure of Apobacterioferritin · the same entry in another collection · chain A against A, TM-score 1.00
  • P0ABD4 · AlphaFold monomer V2.0 prediction for bacterioferritin (P0ABD4) · a predicted model of the same protein · chain A against A, TM-score 0.96

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