MolNFT v1 · #88216 · protein

Structure of pii signaling protein glnz from azospirillum brasilense in complex with adenosine diphosphate

4CO2 · Pii-like protein pz: “Structure of pii signaling protein glnz from azospirillum brasilense in complex with adenosine diphosphate”. X-ray diffraction, 1 ligand (ADP), 3 pockets (best druggability 0.32). MolNFT v1 #88216 on GenesisL1…

PDB: 4CO2
Type: protein
Length: 224 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pii-like protein pz
UniProt: P70731
Ligands: ADP
Pockets: 3 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 29% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Pii-like protein pz	protein	112	29% helix, 36% strand	P70731

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
PG4 · Tetraethylene glycol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.32	0.76	13	ADP
2	54	0.29	0.75	13	ADP
3	54	0.27	0.74	18	empty

Interfaces

1 interface between chains.

A–B · 48 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

4CO2 · Structure of PII signaling protein GlnZ from Azospirillum brasilense in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P70731
Elsewhere: RCSB PDB 4CO2 · PDBe 4CO2 · UniProt P70731

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