MolNFT v1 · #88215 · protein

Structure of pii signaling protein glnz from azospirillum brasilense in complex with adenosine diphosphate

4CO1 · Pii-like protein pz: “Structure of pii signaling protein glnz from azospirillum brasilense in complex with adenosine diphosphate”. X-ray diffraction, 1 ligand (ADP), 2 pockets (best druggability 0.30). MolNFT v1 #88215 on GenesisL1…

PDB: 4CO1
Type: protein
Length: 224 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pii-like protein pz
UniProt: P70731
Ligands: ADP
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 25% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Pii-like protein pz	protein	112	25% helix, 34% strand	P70731

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	55	0.30	0.75	16	ADP
2	57	0.28	0.74	14	ADP

Interfaces

1 interface between chains.

A–B · 20 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

4CO1 · Structure of PII signaling protein GlnZ from Azospirillum brasilense in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P70731
Elsewhere: RCSB PDB 4CO1 · PDBe 4CO1 · UniProt P70731

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