MolNFT v1 · #8814 · protein
Catalase from micrococcus lysodeikticu
1HBZ: “Catalase from micrococcus lysodeikticu”. X-ray diffraction, 2 ligands (HEM, SO4), 5 pockets (best druggability 0.76). MolNFT v1 #8814 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1HBZ
- Type
- protein
- Length
- 498 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Catalase
- EC
- 1.11.1.6
- Ligands
- HEM, SO4
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 31% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Catalase (EC 1.11.1.6) | protein | 498 | 31% helix, 17% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 351 | 0.76 | 0.86 | 42 | HEM |
| 2 | 220 | 0.55 | 0.78 | 27 | SO4 |
| 3 | 231 | 0.50 | 0.76 | 31 | empty |
| 4 | 105 | 0.36 | 0.74 | 17 | empty |
| 5 | 52 | 0.33 | 0.78 | 15 | empty |
Compared structures
- 1HBZ · Catalase from Micrococcus lysodeikticu · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1HBZ · PDBe 1HBZ
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.