MolNFT v1 · #87877 · protein
Mutagenesis of a rhodobacteraceae L-haloacid dehalogenase
4CE6: “Mutagenesis of a rhodobacteraceae L-haloacid dehalogenase”. X-ray diffraction, 4 pockets (best druggability 0.58). MolNFT v1 #87877 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4CE6
- Type
- protein
- Length
- 450 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-haloacid dehalogenase
- EC
- 3.8.1.2
- UniProt
- M9P6K0
- Pockets
- 4 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 49% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | L-haloacid dehalogenase (EC 3.8.1.2) | protein | 226 | 49% helix, 13% strand | M9P6K0 |
| B | L-haloacid dehalogenase (EC 3.8.1.2) | protein | 224 | 49% helix, 13% strand | M9P6K0 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.58 | 0.81 | 26 | empty |
| 2 | 204 | 0.57 | 0.80 | 29 | empty |
| 3 | 50 | 0.41 | 0.82 | 17 | empty |
| 4 | 64 | 0.36 | 0.78 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1932 Ų buried · 25 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (nonstandard).
Compared structures
- 4CE6 · Mutagenesis of a Rhodobacteraceae L-haloacid dehalogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt M9P6K0
- Elsewhere: RCSB PDB 4CE6 · PDBe 4CE6 · UniProt M9P6K0
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.