MolNFT v1 · #87534 · protein
Salmonella enterica trimeric lipoprotein sadb
4C47 · Inner membrane lipoprotein: “Salmonella enterica trimeric lipoprotein sadb”. X-ray diffraction, 3 pockets (best druggability 0.78). MolNFT v1 #87534 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4C47
- Type
- protein
- Length
- 568 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inner membrane lipoprotein
- UniProt
- Q8ZL65
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 3 distinct chains · 38% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inner membrane lipoprotein | protein | 191 | 39% helix, 35% strand | Q8ZL65 |
| B | Inner membrane lipoprotein | protein | 190 | 38% helix, 35% strand | Q8ZL65 |
| C | Inner membrane lipoprotein | protein | 187 | 36% helix, 34% strand | Q8ZL65 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.78 | 0.98 | 24 | empty |
| 2 | 370 | 0.61 | 0.77 | 44 | empty |
| 3 | 170 | 0.47 | 0.76 | 32 | empty |
Interfaces
3 interfaces between chains.
- A–C · 2031 Ų buried · 26 hydrogen bonds · protein-protein
- B–C · 2021 Ų buried · 23 hydrogen bonds · protein-protein
- A–B · 1991 Ų buried · 28 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZL65
- Elsewhere: RCSB PDB 4C47 · PDBe 4C47 · UniProt Q8ZL65
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