MolNFT v1 · #87435 · protein

Coiled coil domain of the ZFL2-1 ORF1 protein from the zebrafish ZFL2-1 retrotransposon

4C1A · ORF1-encoded protein: “Coiled coil domain of the ZFL2-1 ORF1 protein from the zebrafish ZFL2-1 retrotransposon”. X-ray diffraction. MolNFT v1 #87435 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4C1A
Type: protein
Length: 138 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ORF1-encoded protein
UniProt: Q3LG57

Structure

x-ray diffraction · 3 distinct chains · 89% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ORF1-encoded protein	protein	36	86% helix, 0% strand	Q3LG57
B, C	ORF1-encoded protein	protein	35	91% helix, 0% strand	Q3LG57
D	ORF1-encoded protein	protein	32	91% helix, 0% strand	Q3LG57

Ligands and binding sites

GOL · Glycerol · additive · 5 copies · chains A, B, D, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

5 interfaces between chains.

C–D · 961 Å² buried · 7 hydrogen bonds · protein-protein
A–B · 952 Å² buried · 4 hydrogen bonds · protein-protein
B–D · 266 Å² buried · 3 hydrogen bonds · protein-protein
B–C · 78 Å² buried · 0 hydrogen bonds · protein-protein
A–D · 26 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

4C1A · Coiled coil domain of the ZfL2-1 ORF1 protein from the zebrafish ZfL2- 1 retrotransposon · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3LG57
Elsewhere: RCSB PDB 4C1A · PDBe 4C1A · UniProt Q3LG57

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