MolNFT v1 · #8710 · protein

Bull seminal plasma pdc-109 fibronectin type II module

1H8P · Seminal plasma protein pdc-109: “Bull seminal plasma pdc-109 fibronectin type II module”. X-ray diffraction, 1 ligand (PC). MolNFT v1 #8710 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1H8P
Type: protein
Length: 176 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Seminal plasma protein pdc-109
UniProt: P02784
Ligands: PC

Structure

x-ray diffraction · 1 distinct chain · 8% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Seminal plasma protein pdc-109	protein	88	8% helix, 32% strand	P02784

Ligands and binding sites

PC · Phosphocholine · ligand · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 377 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

1H8P · Bull seminal plasma PDC-109 fibronectin type II module · the same entry in another collection · chain A against A, TM-score 1.00
P02784 · AlphaFold monomer V2.0 prediction for seminal plasma protein pdc-109 (P02784) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02784
Elsewhere: RCSB PDB 1H8P · PDBe 1H8P · UniProt P02784

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