MolNFT v1 · #87058 · protein

High resolution crystal structure of bacillus subtilis dltc

4BPH · D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 2: “High resolution crystal structure of bacillus subtilis dltc”. X-ray diffraction, 2 ligands (PNS, MG). MolNFT v1 #87058 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4BPH
Type: protein
Length: 85 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 2
EC: 6.1.1.13
UniProt: P39579
Ligands: PNS, MG

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	D-alanine--POLY(PHOSPHORIBITOL) ligase subunit 2 (EC 6.1.1.13)	protein	85	54% helix, 2% strand	P39579

Ligands and binding sites

PNS · 4'-phosphopantetheine · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 cofactor (phosphopantetheinylation).

Compared structures

4BPH · High resolution crystal structure of Bacillus subtilis DltC · the same entry in another collection · chain A against A, TM-score 1.00
P39579 · AlphaFold monomer V2.0 prediction for D-alanyl carrier protein (P39579) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39579
Elsewhere: RCSB PDB 4BPH · PDBe 4BPH · UniProt P39579

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