MolNFT v1 · #86999 · protein

Crystal structure of S. aureus fabi in complex with NADP and 5-fluoro-2-phenoxyphenol

4BNK · Enoyl-[acyl-carrier-protein] reductase [NADPH]: “Crystal structure of S. aureus fabi in complex with NADP and 5-fluoro-2-phenoxyphenol”. X-ray diffraction, 4 ligands (NAP, FPL, GLU), 20 pockets (best druggability 0.89). MolNFT v1…

PDB: 4BNK
Type: protein
Length: 2,036 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Enoyl-[acyl-carrier-protein] reductase [NADPH]
EC: 1.3.1.10
UniProt: Q7A6D8
Ligands: NAP, FPL, GLU, CL
Pockets: 20 · best druggability 0.89

Structure

x-ray diffraction · 2 distinct chains · 50% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D, E, H	Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)	protein	254	50% helix, 15% strand	Q7A6D8
B, C, F, G	Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)	protein	255	50% helix, 16% strand	Q7A6D8

Ligands and binding sites

NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 8 copies · chains A, E, B, C, D, F, G, H
FPL · 5-fluoro-2-phenoxyphenol · ligand · 8 copies · chains A, B, C, D, E, F, G, H
GLU · Glutamic acid · ligand · 5 copies · chains F, C, B, A, E, G
CL · Chloride ion · ion · chains A, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1188	0.89	0.91	99	NAP, FPL
2	1161	0.84	0.85	66	empty
3	1155	0.84	0.85	64	empty
4	471	0.82	0.89	47	NAP, FPL
5	505	0.82	0.88	45	NAP, FPL

Interfaces

15 interfaces between chains.

C–D · 1822 Å² buried · 37 hydrogen bonds · protein-protein
G–H · 1803 Å² buried · 40 hydrogen bonds · protein-protein
A–B · 1790 Å² buried · 43 hydrogen bonds · protein-protein
E–F · 1783 Å² buried · 40 hydrogen bonds · protein-protein
B–C · 1435 Å² buried · 31 hydrogen bonds · protein-protein

Compared structures

4BNK · Crystal structure of S. aureus FabI in complex with NADP and 5-fluoro- 2-phenoxyphenol · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7A6D8
Elsewhere: RCSB PDB 4BNK · PDBe 4BNK · UniProt Q7A6D8

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