MolNFT v1 · #86998 · protein

Crystal structure of S. aureus fabi in complex with NADP and 5-methyl-2-phenoxyphenol

4BNJ · Enoyl-[acyl-carrier-protein] reductase [NADPH]: “Crystal structure of S. aureus fabi in complex with NADP and 5-methyl-2-phenoxyphenol”. X-ray diffraction, 3 ligands (GLU, NAP, MJ5), 20 pockets (best druggability 0.89). MolNFT v1…

PDB: 4BNJ
Type: protein
Length: 2,040 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Enoyl-[acyl-carrier-protein] reductase [NADPH]
EC: 1.3.1.10
UniProt: Q7A6D8
Ligands: GLU, NAP, MJ5
Pockets: 20 · best druggability 0.89

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H	Enoyl-[acyl-carrier-protein] reductase [NADPH] (EC 1.3.1.10)	protein	255	51% helix, 15% strand	Q7A6D8

Ligands and binding sites

GLU · Glutamic acid · ligand · 10 copies · chains A, E, B, C, F, G
NAP · Nadp nicotinamide-adenine-dinucleotide phosphate · ligand · 8 copies · chains A, E, B, C, D, F, G, H
MJ5 · 5-methyl-2-phenoxyphenol · ligand · 8 copies · chains A, B, C, D, E, F, G, H

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1197	0.89	0.90	95	NAP, MJ5
2	1129	0.85	0.86	64	empty
3	1130	0.85	0.86	66	empty
4	506	0.83	0.89	45	MJ5, NAP
5	480	0.82	0.89	46	MJ5, NAP

Interfaces

15 interfaces between chains.

G–H · 1806 Å² buried · 41 hydrogen bonds · protein-protein
C–D · 1796 Å² buried · 41 hydrogen bonds · protein-protein
E–F · 1778 Å² buried · 42 hydrogen bonds · protein-protein
A–B · 1769 Å² buried · 38 hydrogen bonds · protein-protein
B–C · 1426 Å² buried · 27 hydrogen bonds · protein-protein

Compared structures

4BNJ · Crystal structure of S. aureus FabI in complex with NADP and 5-methyl- 2-phenoxyphenol · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7A6D8
Elsewhere: RCSB PDB 4BNJ · PDBe 4BNJ · UniProt Q7A6D8

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