MolNFT v1 · #86926 · protein

Variable internal flexibility characterizes the helical capsid formed by agrobacterium VIRE2 protein on single-stranded DNA.

4BLF · Single-strand DNA-binding protein: “Variable internal flexibility characterizes the helical capsid formed by agrobacterium VIRE2 protein on…”. Electron microscopy, 4 pockets (best druggability 0.54). MolNFT v1 #86926 on GenesisL1…

PDB: 4BLF
Type: protein
Length: 224 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-strand DNA-binding protein
UniProt: P08062
Pockets: 4 · best druggability 0.54

Structure

electron microscopy · 1 distinct chain · 32% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-strand DNA-binding protein	protein	224	32% helix, 21% strand	P08062

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	117	0.54	0.82	32	empty
2	142	0.47	0.77	18	empty
3	114	0.36	0.73	19	empty
4	60	0.29	0.74	11	empty

Compared structures

4BLF · Variable internal flexibility characterizes the helical capsid formed by Agrobacterium… · the same entry in another collection · chain A against A, TM-score 1.00
P08062 · AlphaFold monomer V2.0 prediction for single-strand DNA-binding protein (P08062) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08062
Elsewhere: RCSB PDB 4BLF · PDBe 4BLF · UniProt P08062

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