MolNFT v1 · #86574 · protein
Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethylcholinetriazoledipicolinate complex at 1.21 a resolution.
4BAP · Lysozyme C: “Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethylcholinetriazoledipicolinate…”. X-ray diffraction, 4 ligands (DCJ, NA, EU3), 1 pocket (best druggability 0.30). MolNFT v1 #86574 on…
- PDB
- 4BAP
- Type
- protein
- Length
- 129 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lysozyme C
- EC
- 3.2.1.17
- UniProt
- P00698
- Ligands
- DCJ, NA, EU3, CL
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lysozyme C (EC 3.2.1.17) | protein | 129 | 41% helix, 11% strand | P00698 |
Ligands and binding sites
- DCJ · N-((1-(2,6-dicarboxypyridin-4-yl)-1H-1,2,3-triazol-4-yl)methyl)-2-hydroxy-N,N-dimethylethanaminium · ligand · 3 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- EU3 · Europium (III) ion · metal
- CL · Chloride ion · ion · 8 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.30 | 0.76 | 14 | ACT |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4BAP · Hen egg-white lysozyme structure in complex with the europium tris… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00698
- Elsewhere: RCSB PDB 4BAP · PDBe 4BAP · UniProt P00698
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