MolNFT v1 · #86553 · protein

Crystal structure of the apo omega-transaminase from chromobacterium violaceum

4BA4 · Aminotransferase: “Crystal structure of the apo omega-transaminase from chromobacterium violaceum”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.81). MolNFT v1 #86553 on GenesisL1: 3D structure, binding sites…

PDB: 4BA4
Type: protein
Length: 854 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aminotransferase
EC: 2.6.1.18
UniProt: Q7NWG4
Ligands: SO4
Pockets: 4 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Aminotransferase (EC 2.6.1.18)	protein	427	46% helix, 18% strand	Q7NWG4

Ligands and binding sites

SO4 · Sulfate ion · ion · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1094	0.81	0.83	97	empty
2	1123	0.81	0.82	101	empty
3	76	0.38	0.77	16	empty
4	66	0.37	0.77	14	empty

Interfaces

1 interface between chains.

A–B · 2681 Å² buried · 17 hydrogen bonds · protein-protein

Compared structures

4BA4 · Crystal structure of the apo omega-transaminase from Chromobacterium violaceum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7NWG4
Elsewhere: RCSB PDB 4BA4 · PDBe 4BA4 · UniProt Q7NWG4

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