MolNFT v1 · #86496 · DNA
Tensegrity triangle from enzymatically manufactured DNA
4B8D · 5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*DGP…: “Tensegrity triangle from enzymatically manufactured DNA”. X-ray diffraction. MolNFT v1 #86496 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4B8D
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*DGP *GP*AP*CP*AP*TP*CP*A)-3'…
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*AP*CP*DGP *GP*AP*CP*AP*TP*CP*A)-3' | dna | 21 | — | — |
| B | 5'-D(*CP*CP*GP*TP*AP*CP*AP)-3' | dna | 7 | — | — |
| C | 5'-D(*GP*GP*CP*TP*GP*CP)-3' | dna | 6 | — | — |
| D | 5'-D(*TP*CP*TP*GP*AP*TP*GP*TP)-3' | dna | 8 | — | — |
Interfaces
5 interfaces between chains.
- A–B · 345 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- A–D · 320 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- A–C · 309 Ų buried · 21 hydrogen bonds · nucleic-nucleic
- B–C · 99 Ų buried · 1 hydrogen bond · nucleic-nucleic
- B–D · 91 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 4B8D · Tensegrity triangle from enzymatically manufactured DNA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4B8D · PDBe 4B8D
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