MolNFT v1 · #86445 · protein
Crystal structure of in planta processed AVRRPS4
4B6X · Avirulence protein: “Crystal structure of in planta processed AVRRPS4”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #86445 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4B6X
- Type
- protein
- Length
- 127 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Avirulence protein
- UniProt
- Q52432
- Pockets
- 1 · best druggability 0.32
Structure
x-ray diffraction · 2 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Avirulence protein | protein | 69 | 90% helix, 0% strand | Q52432 |
| B | Avirulence protein | protein | 58 | 91% helix, 0% strand | Q52432 |
Ligands and binding sites
- ACT · Acetate ion · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 104 | 0.32 | 0.72 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 684 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 4B6X · Crystal structure of in planta processed AvrRps4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q52432
- Elsewhere: RCSB PDB 4B6X · PDBe 4B6X · UniProt Q52432
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.