MolNFT v1 · #86303 · protein

Complexes of dodecin with flavin and flavin-like ligands

4B2K: “Complexes of dodecin with flavin and flavin-like ligands”. X-ray diffraction, 5 ligands (RBF, MG, NA). MolNFT v1 #86303 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4B2K
Type: protein
Length: 64 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Dodecin
UniProt: B0R5M0
Ligands: RBF, MG, NA, CL, SO4

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Dodecin	protein	64	23% helix, 52% strand	B0R5M0

Ligands and binding sites

RBF · Riboflavin · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A
SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 1 modified (nonstandard).

Compared structures

4B2K · Complexes of dodecin with flavin and flavin-like ligands · the same entry in another collection · chain A against A, TM-score 1.00
B0R5M0 · AlphaFold monomer V2.0 prediction for dodecin (B0R5M0) · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0R5M0
Elsewhere: RCSB PDB 4B2K · PDBe 4B2K · UniProt B0R5M0

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