MolNFT v1 · #86149 · protein
Structure of carbamate kinase from mycoplasma penetrans
4AXS: “Structure of carbamate kinase from mycoplasma penetrans”. X-ray diffraction, 1 ligand (SO4), 4 pockets (best druggability 0.53). MolNFT v1 #86149 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4AXS
- Type
- protein
- Length
- 291 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Carbamate kinase
- UniProt
- Q8EVF4
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.53
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carbamate kinase | protein | 291 | 39% helix, 19% strand | Q8EVF4 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.53 | 0.75 | 41 | SO4 |
| 2 | 70 | 0.49 | 0.84 | 32 | empty |
| 3 | 118 | 0.47 | 0.79 | 20 | empty |
| 4 | 54 | 0.28 | 0.74 | 10 | empty |
Compared structures
- 4AXS · Structure of Carbamate Kinase from Mycoplasma penetrans · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EVF4
- Elsewhere: RCSB PDB 4AXS · PDBe 4AXS · UniProt Q8EVF4
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