MolNFT v1 · #86089 · protein

Tailspike protein mutant E372Q of E. COLI bacteriophage HK620

4AVZ · Tail spike protein: “Tailspike protein mutant E372Q of E. COLI bacteriophage HK620”. X-ray diffraction, 3 pockets (best druggability 0.41). MolNFT v1 #86089 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4AVZ
Type: protein
Length: 598 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tail spike protein
UniProt: Q9AYY6
Pockets: 3 · best druggability 0.41

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tail spike protein	protein	598	9% helix, 43% strand	Q9AYY6

Ligands and binding sites

144 · Tris-hydroxymethyl-methyl-ammonium · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.41	0.77	24	empty
2	127	0.39	0.74	18	empty
3	87	0.39	0.77	19	empty

Compared structures

4AVZ · Tailspike protein mutant E372Q of E. coli bacteriophage HK620 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AYY6
Elsewhere: RCSB PDB 4AVZ · PDBe 4AVZ · UniProt Q9AYY6

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