MolNFT v1 · #86062 · protein

Kluyveromyces lactis HSV2 complete loop 6CD

4AV8 · SVP1-like protein 2: “Kluyveromyces lactis HSV2 complete loop 6CD”. X-ray diffraction, 2 pockets (best druggability 0.70). MolNFT v1 #86062 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4AV8
Type: protein
Length: 325 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SVP1-like protein 2
UniProt: Q6CN23
Pockets: 2 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SVP1-like protein 2	protein	325	1% helix, 51% strand	Q6CN23

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	401	0.70	0.82	47	empty
2	93	0.34	0.74	23	empty

Compared structures

4AV8 · Kluyveromyces lactis Hsv2 complete loop 6CD · the same entry in another collection · chain A against A, TM-score 1.00
Q6CN23 · AlphaFold monomer V2.0 prediction for SVP1-like protein 2 (Q6CN23) · a predicted model of the same protein · chain A against A, TM-score 0.94

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6CN23
Elsewhere: RCSB PDB 4AV8 · PDBe 4AV8 · UniProt Q6CN23

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