MolNFT v1 · #85999 · protein
Crystal structure of the NF90-NF45 dimerisation domain complex with UTP
4AT9 · Interleukin enhancer-binding factor 2: “Crystal structure of the NF90-NF45 dimerisation domain complex with UTP”. X-ray diffraction, 2 ligands (UTP, MG), 6 pockets (best druggability 0.56). MolNFT v1 #85999 on GenesisL1: 3D…
- PDB
- 4AT9
- Type
- protein
- Length
- 640 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Interleukin enhancer-binding factor 2; Interleukin enhancer-binding factor 3
- UniProt
- Q9CXY6, Q9Z1X4
- Ligands
- UTP, MG
- Pockets
- 6 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 50% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Interleukin enhancer-binding factor 2 | protein | 332 | 48% helix, 13% strand | Q9CXY6 |
| B | Interleukin enhancer-binding factor 3 | protein | 308 | 51% helix, 12% strand | Q9Z1X4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 294 | 0.56 | 0.76 | 37 | UTP, MG |
| 2 | 153 | 0.50 | 0.79 | 23 | empty |
| 3 | 116 | 0.37 | 0.74 | 22 | empty |
| 4 | 72 | 0.36 | 0.76 | 18 | empty |
| 5 | 105 | 0.35 | 0.74 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 1692 Ų buried · 26 hydrogen bonds · protein-protein
Compared structures
- 4AT9 · Crystal structure of the NF90-NF45 dimerisation domain complex with UTP · the same entry in another collection · chain A against A, TM-score 1.00
- Q9CXY6 · AlphaFold monomer V2.0 prediction for interleukin enhancer-binding factor 2 (Q9CXY6) · a predicted model of the same protein · chain A against A, TM-score 1.00
- Q9Z1X4 · AlphaFold monomer V2.0 prediction for interleukin enhancer-binding factor 3 (Q9Z1X4) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9CXY6
- Every structure of UniProt Q9Z1X4
- Elsewhere: RCSB PDB 4AT9 · PDBe 4AT9 · UniProt Q9CXY6 · UniProt Q9Z1X4
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