MolNFT v1 · #85948 · protein
Hafnia alvei phytase apo form
4ARS · Histidine acid phosphatase: “Hafnia alvei phytase apo form”. X-ray diffraction, 5 pockets (best druggability 0.71). MolNFT v1 #85948 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4ARS
- Type
- protein
- Length
- 407 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histidine acid phosphatase
- EC
- 3.1.3.26
- UniProt
- G9Y2J2
- Pockets
- 5 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histidine acid phosphatase (EC 3.1.3.26) | protein | 407 | 42% helix, 14% strand | G9Y2J2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 659 | 0.71 | 0.78 | 45 | GOL |
| 2 | 63 | 0.48 | 0.84 | 13 | GOL |
| 3 | 106 | 0.46 | 0.79 | 19 | ACT |
| 4 | 55 | 0.40 | 0.81 | 17 | empty |
| 5 | 74 | 0.36 | 0.77 | 15 | GOL |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 4ARS · Hafnia Alvei phytase apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G9Y2J2
- Elsewhere: RCSB PDB 4ARS · PDBe 4ARS · UniProt G9Y2J2
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