GL1X · GenesisL1 explorer

MolNFT v1 · #85868 · protein

Human angiotensin-converting enzyme in complex with angiotensin-II

4APH: “Human angiotensin-converting enzyme in complex with angiotensin-II”. X-ray diffraction, 4 ligands (NAG, BMA, ZN), 3 pockets (best druggability 0.86). MolNFT v1 #85868 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4APH
Type
protein
Length
588 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Angiotensin-converting enzyme; Angiotensin-2
EC
3.2.1.-, 3.4.15.1
UniProt
P12821, P01019
Ligands
NAG, BMA, ZN, CL
Pockets
3 · best druggability 0.86

Structure

x-ray diffraction · 2 distinct chains · 62% helix, 4% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AAngiotensin-converting enzyme (EC 3.2.1.-, 3.4.15.1)protein58263% helix, 3% strandP12821
PAngiotensin-2protein60% helix, 33% strandP01019

Ligands and binding sites

  • NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
  • BMA · beta-D-mannopyranose · sugar
  • ZN · Zinc ion · metal · chains A, P
  • CL · Chloride ion · ion · 2 copies · chains A
  • ACT · Acetate ion · additive · 5 copies · chains A, P
  • PE4 · 2-{2-[2-(2-{2-[2-(2-ethoxy-ethoxy)-ethoxy]-ethoxy}-ethoxy)-ethoxy]-ethoxy}-ethanol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
19960.860.8769ACT
26010.800.8567PE4, ACT
3960.360.7428empty

Interfaces

1 interface between chains.

  • A–P · 683 Ų buried · 17 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 3 disulfide, 3 glycan (disulfide, N-glycosylation, glycosylation).

Compared structures

  • 4APH · Human angiotensin-converting enzyme in complex with angiotensin-II · the same entry in another collection · chain A against A, TM-score 1.00
  • P12821 · AlphaFold monomer V2.0 prediction for angiotensin-converting enzyme (P12821) · a predicted model of the same protein · chain A against A, TM-score 0.99
  • P01019 · AlphaFold monomer V2.0 prediction for angiotensinogen (P01019) · a predicted model of the same protein · chain P against A, TM-score 0.60

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