MolNFT v1 · #85781 · protein

A megaviridae orfan gene encode a new nucleotidyl transferase

4AMS · MG662: “A megaviridae orfan gene encode a new nucleotidyl transferase”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.73). MolNFT v1 #85781 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4AMS
Type: protein
Length: 367 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MG662
UniProt: G5CQN7
Ligands: MG
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MG662	protein	367	54% helix, 14% strand	G5CQN7

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	926	0.73	0.77	78	MG
2	84	0.33	0.74	18	empty

Compared structures

4AMS · A Megaviridae ORFan gene encode a new nucleotidyl transferase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G5CQN7
Elsewhere: RCSB PDB 4AMS · PDBe 4AMS · UniProt G5CQN7

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