MolNFT v1 · #85777 · protein
Crystal structure of the acyltransferase domain of the iterative polyketide synthase in enediyne biosynthesis reveals the molecular basis of substrate specificity
4AMN · DYNE8: “Crystal structure of the acyltransferase domain of the iterative polyketide synthase in enediyne biosynthesis…”. X-ray diffraction, 1 ligand (CL), 3 pockets (best druggability 0.70). MolNFT v1 #85777 on GenesisL1: 3D…
- PDB
- 4AMN
- Type
- protein
- Length
- 384 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DYNE8
- UniProt
- Q84HI8
- Ligands
- CL
- Pockets
- 3 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DYNE8 | protein | 384 | 45% helix, 18% strand | Q84HI8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 251 | 0.70 | 0.85 | 34 | GOL |
| 2 | 133 | 0.41 | 0.75 | 25 | empty |
| 3 | 77 | 0.31 | 0.73 | 17 | empty |
Compared structures
- 4AMN · Crystal Structure of the Acyltransferase Domain of the Iterative Polyketide Synthase in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q84HI8
- Elsewhere: RCSB PDB 4AMN · PDBe 4AMN · UniProt Q84HI8
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.