MolNFT v1 · #85770 · protein

Crystal structure of the glycosyltransferase snogd from streptomyces nogalater

4AMG: “Crystal structure of the glycosyltransferase snogd from streptomyces nogalater”. X-ray diffraction, 10 pockets (best druggability 0.75). MolNFT v1 #85770 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4AMG
Type: protein
Length: 732 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Snogd
UniProt: Q9RN61
Pockets: 10 · best druggability 0.75

Structure

x-ray diffraction · 2 distinct chains · 40% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Snogd	protein	362	42% helix, 15% strand	Q9RN61
B	Snogd	protein	370	39% helix, 15% strand	Q9RN61

Pockets

10 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	321	0.75	0.87	41	empty
2	335	0.72	0.85	41	empty
3	535	0.65	0.76	67	empty
4	381	0.64	0.78	46	empty
5	230	0.59	0.80	34	empty

Interfaces

1 interface between chains.

A–B · 1506 Å² buried · 21 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (methylation).

Compared structures

4AMG · Crystal structure of the glycosyltransferase SnogD from Streptomyces nogalater · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RN61
Elsewhere: RCSB PDB 4AMG · PDBe 4AMG · UniProt Q9RN61

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.