MolNFT v1 · #8509 · protein
Prolyl oligopeptidase from porcine brain, Y473F mutant
1H2X · Prolyl endopeptidase: “Prolyl oligopeptidase from porcine brain, Y473F mutant”. X-ray diffraction, 6 pockets (best druggability 0.74). MolNFT v1 #8509 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1H2X
- Type
- protein
- Length
- 710 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prolyl endopeptidase
- EC
- 3.4.21.26
- UniProt
- P23687
- Pockets
- 6 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prolyl endopeptidase (EC 3.4.21.26) | protein | 710 | 23% helix, 33% strand | P23687 |
Ligands and binding sites
- GOL · Glycerol · additive · 4 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 799 | 0.74 | 0.79 | 74 | empty |
| 2 | 467 | 0.66 | 0.78 | 38 | GOL |
| 3 | 331 | 0.58 | 0.77 | 42 | GOL |
| 4 | 87 | 0.47 | 0.81 | 23 | empty |
| 5 | 91 | 0.39 | 0.77 | 16 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23687
- Elsewhere: RCSB PDB 1H2X · PDBe 1H2X · UniProt P23687
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