MolNFT v1 · #85033 · protein + RNA
Solution structure of HIV-1 rev peptide-RNA aptamer complex
484D: “Solution structure of HIV-1 rev peptide-RNA aptamer complex”. Solution nmr, 1 pocket (best druggability 0.56). MolNFT v1 #85033 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 484D
- Type
- protein + RNA
- Length
- 44 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA aptamer; Basic rev peptide
- UniProt
- Q9IQN3
- Pockets
- 1 · best druggability 0.56
Structure
solution nmr · 2 distinct chains · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | RNA aptamer | rna | 27 | — | — |
| A | Basic rev peptide | protein | 17 | 0% helix, 0% strand | Q9IQN3 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 75 | 0.56 | 0.88 | 14 | empty |
Interfaces
1 interface between chains.
- B–A · 1316 Ų buried · 49 hydrogen bonds · protein-nucleic
Compared structures
- 484D · Solution structure of HIV-1 rev peptide-RNA aptamer complex · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9IQN3
- Elsewhere: RCSB PDB 484D · PDBe 484D · UniProt Q9IQN3
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