MolNFT v1 · #84981 · RNA

Crystal structure of a 14 base pair RNA duplex with nonsymmetrical tandem G.U wobble base pairs

433D · 5'-R(*GP*GP*UP*AP*UP*UP*GP*CP*GP*GP*UP*AP*CP*C)- 3': “Crystal structure of a 14 base pair RNA duplex with nonsymmetrical tandem G.U wobble base pairs”. X-ray diffraction, 1 pocket (best druggability 0.30). MolNFT v1 #84981 on…

PDB: 433D
Type: RNA
Length: 28 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-R(*GP*GP*UP*AP*UP*UP*GP*CP*GP*GP*UP*AP*CP*C)- 3'
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-R(GPGPUPAPUPUPGPCPGPGPUPAPCPC)- 3'	rna	14	—	—

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	99	0.30	0.72	14	empty

Interfaces

1 interface between chains.

A–B · 696 Å² buried · 62 hydrogen bonds · nucleic-nucleic

Compared structures

433D · Crystal structure of a 14 base pair RNA duplex with nonsymmetrical tandem G.U wobble base… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 433D · PDBe 433D

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