MolNFT v1 · #84968 · DNA + RNA
5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'- R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3'
421D · DNA (5'-D(*TP*TP*CP*TP*TP*(CBR)P*TP*TP*C)-3'): “5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'- R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3'”. X-ray diffraction. MolNFT v1 #84968 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 421D
- Type
- DNA + RNA
- Length
- 17 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'-D(*TP*TP*CP*TP*TP*(CBR)P*TP*TP*C)-3'); RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3')
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'-D(*TP*TP*CP*TP*TP*(CBR)P*TP*TP*C)-3') | dna | 8 | — | — |
| B | RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3') | rna | 9 | — | — |
Interfaces
1 interface between chains.
- A–B · 389 Ų buried · 45 hydrogen bonds · nucleic-nucleic
Modifications
Observed in the structure: 1 modified (nucleotide modification).
Compared structures
- 421D · 5'-D(*TP*TP*CP*TP*TP*(BRO)CP*TP*TP*C)-3', 5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*A)-3' · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 421D · PDBe 421D
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