MolNFT v1 · #84957 · RNA
Crystal structure of an RNA R(CCCIUGGG) with three independent duplexes incorporating tandem I.U wobbles
409D · RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3'): “Crystal structure of an RNA R(CCCIUGGG) with three independent duplexes incorporating tandem I.U wobbles”. X-ray diffraction, 1 pocket (best druggability 0.29). MolNFT v1 #84957 on GenesisL1…
- PDB
- 409D
- Type
- RNA
- Length
- 48 nucleotides
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3')
- Pockets
- 1 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | RNA (5'-R(*CP*CP*CP*IP*UP*GP*GP*G)-3') | rna | 8 | — | — |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.29 | 0.75 | 8 | empty |
Interfaces
6 interfaces between chains.
- A–B · 423 Ų buried · 52 hydrogen bonds · nucleic-nucleic
- E–F · 422 Ų buried · 39 hydrogen bonds · nucleic-nucleic
- C–D · 420 Ų buried · 42 hydrogen bonds · nucleic-nucleic
- D–F · 123 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- D–E · 101 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 409D · Crystal structure of an RNA R(CCCIUGGG) with three independent duplexes incorporating… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 409D · PDBe 409D
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