MolNFT v1 · #84933 · protein
Bacillus halodurans TRP RNA-binding attenuation protein (trap): a 12-subunit assembly
3ZZL · Transcription attenuation protein mtrb: “Bacillus halodurans TRP RNA-binding attenuation protein (trap): a 12-subunit assembly”. X-ray diffraction, 1 ligand (TRP), 2 pockets (best druggability 0.73). MolNFT v1 #84933 on GenesisL1…
- PDB
- 3ZZL
- Type
- protein
- Length
- 210 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcription attenuation protein mtrb
- UniProt
- Q9KCC6
- Ligands
- TRP
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Transcription attenuation protein mtrb | protein | 70 | 0% helix, 59% strand | Q9KCC6 |
Ligands and binding sites
- TRP · Tryptophan · ligand · 6 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.73 | 0.98 | 21 | TRP |
| 2 | 65 | 0.73 | 0.98 | 20 | TRP |
Interfaces
2 interfaces between chains.
- A–B · 1192 Ų buried · 20 hydrogen bonds · protein-protein
- B–C · 1175 Ų buried · 14 hydrogen bonds · protein-protein
Compared structures
- 3ZZL · Bacillus halodurans trp RNA-binding attenuation protein (TRAP): a 12- subunit assembly · the same entry in another collection · chain C against C, TM-score 1.00
- Q9KCC6 · AlphaFold monomer V2.0 prediction for transcription attenuation protein mtrb (Q9KCC6) · a predicted model of the same protein · chain C against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9KCC6
- Elsewhere: RCSB PDB 3ZZL · PDBe 3ZZL · UniProt Q9KCC6
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