MolNFT v1 · #84815 · protein
Model of hexameric aaa domain arrangement of green-type rubisco activase from tobacco.
3ZW6 · Ribulose bisphosphate CARBOXYLASE/OXYGENASE activase 1…: “Model of hexameric aaa domain arrangement of green-type rubisco activase from tobacco.”. Electron microscopy, 20 pockets (best druggability 0.70). MolNFT v1 #84815 on…
- PDB
- 3ZW6
- Type
- protein
- Length
- 1,578 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribulose bisphosphate CARBOXYLASE/OXYGENASE activase 1, chloroplastic
- UniProt
- Q40460
- Pockets
- 20 · best druggability 0.70
Structure
electron microscopy · 1 distinct chain · 54% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Ribulose bisphosphate CARBOXYLASE/OXYGENASE activase 1, chloroplastic | protein | 263 | 54% helix, 11% strand | Q40460 |
Pockets
20 pockets found on a 1 Å grid, 14 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 850 | 0.70 | 0.76 | 61 | empty |
| 2 | 564 | 0.69 | 0.79 | 46 | empty |
| 3 | 554 | 0.69 | 0.79 | 48 | empty |
| 4 | 712 | 0.69 | 0.76 | 54 | empty |
| 5 | 710 | 0.68 | 0.76 | 48 | empty |
Interfaces
6 interfaces between chains.
- E–F · 1460 Ų buried · 8 hydrogen bonds · protein-protein
- B–C · 1458 Ų buried · 8 hydrogen bonds · protein-protein
- C–D · 1416 Ų buried · 9 hydrogen bonds · protein-protein
- A–F · 1412 Ų buried · 9 hydrogen bonds · protein-protein
- A–B · 1340 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 3ZW6 · Model of hexameric aaa domain arrangement of green-type rubisco activase from tobacco. · the same entry in another collection · chain C against C, TM-score 1.00
- Q40460 · AlphaFold monomer V2.0 prediction for ribulose bisphosphate CARBOXYLASE/OXYGENASE… · a predicted model of the same protein · chain A against A, TM-score 0.80
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q40460
- Elsewhere: RCSB PDB 3ZW6 · PDBe 3ZW6 · UniProt Q40460
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