MolNFT v1 · #84742 · protein
Cytochrome C prime from alcaligenes xylosoxidans: carbon monooxide bound L16G variant at 1.05 a resolution: unrestraint refinement
3ZTZ · Cytochrome C': “Cytochrome C prime from alcaligenes xylosoxidans: carbon monooxide bound L16G variant at 1.05 a resolution…”. X-ray diffraction, 2 ligands (HEC, CMO), 1 pocket (best druggability 0.67). MolNFT v1 #84742 on GenesisL1…
- PDB
- 3ZTZ
- Type
- protein
- Length
- 125 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C'
- UniProt
- P00138
- Ligands
- HEC, CMO
- Pockets
- 1 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 74% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C' | protein | 125 | 74% helix, 2% strand | P00138 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.67 | 0.85 | 31 | HEC, CMO |
Modifications
Observed in the structure: 2 cofactor, 1 modified (heme c attachment, cyclization).
Compared structures
- 3ZTZ · Cytochrome c prime from alcaligenes xylosoxidans: carbon monooxide bound L16G variant at… · the same entry in another collection · chain A against A, TM-score 1.00
- P00138 · AlphaFold monomer V2.0 prediction for cytochrome C' (P00138) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00138
- Elsewhere: RCSB PDB 3ZTZ · PDBe 3ZTZ · UniProt P00138
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