MolNFT v1 · #84662 · protein

Crystal structure of rxlr effector PEXRD2 from phytophthora infestans

3ZRG · PEXRD2 family secreted rxlr effector peptide, putative: “Crystal structure of rxlr effector PEXRD2 from phytophthora infestans”. X-ray diffraction, 1 ligand (BR), 1 pocket (best druggability 0.48). MolNFT v1 #84662 on GenesisL1: 3D…

PDB: 3ZRG
Type: protein
Length: 131 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: PEXRD2 family secreted rxlr effector peptide, putative
UniProt: D0NIL2
Ligands: BR
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 2 distinct chains · 73% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	PEXRD2 family secreted rxlr effector peptide, putative	protein	66	73% helix, 0% strand	D0NIL2
B	PEXRD2 family secreted rxlr effector peptide, putative	protein	65	72% helix, 0% strand	D0NIL2

Ligands and binding sites

BR · Bromide ion · ion · 7 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	109	0.48	0.80	33	BR

Interfaces

1 interface between chains.

A–B · 984 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

3ZRG · Crystal structure of RxLR effector PexRD2 from Phytophthora infestans · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D0NIL2
Elsewhere: RCSB PDB 3ZRG · PDBe 3ZRG · UniProt D0NIL2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.