MolNFT v1 · #84554 · protein

Crystal structure of FMN-binding protein (NP_142786.1) from pyrococcus horikoshii with bound P-hydroxybenzaldehyde

3ZOC: “Crystal structure of FMN-binding protein (NP_142786.1) from pyrococcus horikoshii with bound…”. X-ray diffraction, 2 ligands (FMN, HBA), 2 pockets (best druggability 0.64). MolNFT v1 #84554 on GenesisL1: 3D structure, binding sites…

PDB: 3ZOC
Type: protein
Length: 176 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FMN-binding protein
UniProt: O58586
Ligands: FMN, HBA
Pockets: 2 · best druggability 0.64

Structure

x-ray diffraction · 1 distinct chain · 23% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	FMN-binding protein	protein	176	23% helix, 39% strand	O58586

Ligands and binding sites

FMN · Flavin mononucleotide · ligand · chains A
HBA · P-hydroxybenzaldehyde · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	221	0.64	0.83	31	FMN, HBA
2	145	0.46	0.76	18	empty

Compared structures

3ZOC · Crystal structure of FMN-binding protein (NP_142786.1) from Pyrococcus horikoshii with… · the same entry in another collection · chain A against A, TM-score 1.00
O58586 · AlphaFold monomer V2.0 prediction for uncharacterized protein PH0856 (O58586) · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O58586
Elsewhere: RCSB PDB 3ZOC · PDBe 3ZOC · UniProt O58586

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.